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Aug
arXiv:2408.06583v1 Announce Type: new Abstract: Biomedical Event Extraction (BEE) is a critical task that involves modeling complex relationships between fine-grained entities in biomedical text data. However, most existing BEE models rely on classification methods that neglect the label semantics and argument dependency structure within the data. To address these limitations, we propose GenBEE, a generative model enhanced with a structure-aware prefix for biomedical event extraction. GenBEE constructs event prompts that leverage knowledge distilled from large language models (LLMs), thereby incorporating both label semantics and argument dependency relationships. Additionally, GenBEE introduces a structural prefix learning module that generates structure-aware prefixes with…